大熊猫和小熊猫粪便DNA提取的简易方法

采集了大熊猫和小熊猫的新鲜粪便样品 ,使用 1 0 0 %乙醇保存。通过重复离心富集研究动物的肠道脱落细胞 ,并使用乙醇和双蒸水洗涤以除去抑制物。用 1 %的SDS快速裂解细胞 ,离心除去残渣后 ,向裂解液中加入蛋白酶进行消化。消化结束后使用等体积的酚 /氯仿抽提 ,乙醇沉淀DNA。用双蒸水溶解粪便DNA后 ,使用PCR产物纯化试剂盒对粪便DNA进行纯化。电泳检测结果显示 ,从乙醇保存的大、小熊猫粪便样品中抽提到高质量的粪便DNA。对线粒体控制区、细胞色素b基因、 1 2SrRNA基因的PCR扩增反应以及测序结果也证实了样品保存方法和DNA抽提方法可靠而高效。此方法使用实验室内常用的分子生物学试剂 ,不仅克服了分子粪便学研究中常见的抑制物粪便DNA微量降解严重等障碍 ,与商业化的粪便抽提试剂盒 (QIAampDNAStoolMiniKit,Qiagen)相比还是一种经济的试验方法 (抽提反应成本为试剂盒的 1 / 5 )。文中还对粪便DNA内细菌基因组等背景DNA可能对分子粪便学试验结果的影响进行了探讨。在基于PCR技术的遗传学研究中 ,对于植食性动物而言 ,粪便内的背景DNA对目标动物DNA片断的扩增和序列测定未见影响 ;但对于肉食性动物 ,则必须考虑被捕食者基因组对试验可能产生的影响 ,应谨慎对待     

佛坪自然保护区野生大熊猫交配行为的观察

On March 26 and 27, 2003, we observed six and five giant pandas assembled together respectively in Huodiba and Lijiagou districts of Sanguanmiao, Foping Nature Reserve, Shaanxi Province, China. The mating sites were located in the coniferous forest and mixed coniferous and deciduous forest, with steep slope and sparse shrubs and bamboos. Wind power was estimated over 3rd category in those two days. The competition and lighting among male pandas were observed, and the mating right with the female panda was mainly based on the hierarchical ordering. However, not all the winners during competition can be access to mating with the female panda. For wild giant panda, its mating system is maybe plastic, which perhaps is affected by environment, time and panda population itself. Cubs or sub-adults are observed oceurring at the mating site, which is considered to be linked with the learning of the reproductive behavior. Our results maybe provide a useful guideline to the management and breeding of giant pandas in the captivity.     

小相岭大熊栖息地干扰调查

强烈的人类干扰是大熊猫濒危的主要原因。本于2001年6～7月对四川省小相岭大熊猫栖息地内竹子开花、火灾、滑坡3种自然干扰类型和采伐、放牧、采药、公路、偷猎、割竹采笋、耕作、开矿和旅游9种人类干扰类型进行了调查。调查样方878个,干扰发生在海拔1800～4000m。结果表明：自然干扰都不严重,干扰比例最高的竹子开花,也仅占1．14％。采伐、放牧、采药和公路是主要人类干扰类型,分别占调查总样方的34．9％,26．3％,5．1％和4．2％。干扰最严重的地段是海拔3000～3499m,采伐样方的49．67％,放牧样方的47．19％,采药样方的31．11％均发生在该段,同时有48．89％的大熊猫活动痕迹样方也在该海拔。近年来,由于国家实施“天然林保护工程”,采伐已不再是主要干扰,而放牧、采药和偷猎等活动在短时间内仍不会减少。     

圈养小熊猫繁殖行为变化及繁殖行为对策

In order to investigate the change of reproductive behaviors and understand reproductive strategies of both male and female red pandas, one-year behavioral observation was conducted through the focal sampling method in the Chengdu Research Base of Giant Panda Breeding from December 1999 to November 2000. Our results indicated that reproductive behaviors showed significant differences between the estrous and non-estrous seasons. Frequencies of the rubbing anogenital, sniffing and licking marking were much higher in estrus than in non-estrus. Bleating only appeared in the estrus and can be regarded as an estrous indicator.The result also demonstrated that both male and females applied different reproductive behavioral strategies. Frequencies of activity, rubbing anogenital, licking and sniffing marking, and bleat were much higher in the male than in the female. However, those of resting and investigating were much lower in the male than in the female. This indicated that the male was more active than the female during the estrus and might imply that the male acts mainly as an estrous message sender, and the female as a message receiver in the estrous season.     

Characterizing the spatial distribution of giant pandas (Ailuropoda melanoleuca) in fragmented forest landscapes

Aim To examine the effects of forest fragmentation on the distribution of the entire wild giant panda (Ailuropoda melanoleuca) population, and to propose a modelling approach for monitoring the spatial distribution and habitat of pandas at the landscape scale using Moderate Resolution Imaging Spectro‐radiometer (MODIS) enhanced vegetation index (EVI) time‐series data. Location Five mountain ranges in south‐western China (Qinling, Minshan, Qionglai, Xiangling and Liangshan). Methods Giant panda pseudo‐absence data were generated from data on panda occurrences obtained from the third national giant panda survey. To quantify the fragmentation of forests, 26 fragmentation metrics were derived from 16‐day composite MODIS 250‐m EVI multi‐temporal data and eight of these metrics were selected following factor analysis. The differences between panda presence and panda absence were examined by applying significance testing. A forward stepwise logistic regression was then applied to explore the relationship between panda distribution and forest fragmentation. Results Forest patch size, edge density and patch aggregation were found to have significant roles in determining the distribution of pandas. Patches of dense forest occupied by giant pandas were significantly larger, closer together and more contiguous than patches where giant pandas were not recorded. Forest fragmentation is least in the Qinling Mountains, while the Xiangling and Liangshan regions have most fragmentation. Using the selected landscape metrics, the logistic regression model predicted the distribution of giant pandas with an overall accuracy of 72.5% (κ = 0.45). However, when a knowledge‐based control for elevation and slope was applied to the regression, the overall accuracy of the model improved to 77.6% (κ = 0.55). Main conclusions Giant pandas appear sensitive to patch size and isolation effects associated with fragmentation of dense forest, implying that the design of effective conservation areas for wild giant pandas must include large and dense forest patches that are adjacent to other similar patches. The approach developed here is applicable for analysing the spatial distribution of the giant panda from multi‐temporal MODIS 250‐m EVI data and landscape metrics at the landscape scale.     

Giant tortoises spread to western Indian Ocean islands by sea drift in pre‐Holocene times,not by later human agency – response to Wilmé et al. (2016a)

Evidence from DNA phylogeny, Plio‐Pleistocene ocean currents, giant tortoise dispersal, evolution of plant defences, radiocarbon dates and archaeology indicates that the endemic giant tortoises on the Mascarenes and Seychelles colonized naturally and were not translocated there by humans.     

Physicochemical properties of giant embryo rice Seonong 17 and Keunnunjami

This study was carried out to determine the physicochemical properties of giant embryo rice “Seonong 17” and “Keunnunjami” in comparison with the normal embryo rice. Scanning electron microscopy revealed that Seonong 17 and Keunnunjami have larger embryo and that starch granules from Keunnunjami were more tightly packed with smaller air spaces between granules. Seonong 17 exhibited the lowest amylose content. Keunnunjami showed the highest protein content, pasting temperature, peak and breakdown viscosities, and gelatinization temperature and enthalpy. Both giant embryo rice samples contained significantly higher amounts of essential amino acids and unsaturated fatty acids than the normal rice. Proteomic analysis using two-dimensional gel electrophoresis revealed differences in the protein profile of Seonong 17 and Keunnunjami. The results could serve as baseline information in evaluating the quality of these two giant embryo rice cultivars and provide a better understanding of their potential uses and food industry applications.     

气候变化对邛崃山系大熊猫主食竹和栖息地分布的影响

气候变化对生物多样性的影响,特别是珍稀濒危物种的影响是当前的研究热点。全球气候变化对大熊猫的影响一直受到广泛关注。根据野外调查的大熊猫活动痕迹点、竹类分布点和主食竹扩散距离数据,采用Maxent模型,利用植被、地形、气候等因素,在RCP8.5下分析了2050年和2070年邛崃山系大熊猫主食竹分布及栖息地变化趋势。结果显示:(1)未来大熊猫适宜生境及主食竹气候适宜区面积均有所减少,到2070年分别减少37.2%和4.7%;(2)未来主食竹分布范围总体向高海拔扩展,但面积持续减少,到2070年分布面积比当前减少8.3%;(3)大熊猫栖息地未来有向高海拔扩张的趋势,在低海拔地区退缩明显,到2070年较当前减少27.2%;但到2070年大熊猫栖息地面积加上非栖息地有主食竹分布的面积,较现有大熊猫栖息地面积大1.5%;(4)受气候变化影响较严重的区域是邛崃山系南部以及低海拔地区,其余区域所受影响相对较小;(5)未来需要加强对受气候变化影响严重区域的监测与保护,特别是邛崃山系中部的大熊猫集中分布区。     

大型水母声学观测与评估技术研究进展

20世纪末以来,世界多个海域频繁出现大型水母暴发现象,对海洋生态系统、海洋渔业、沿海工业和滨海旅游业带来了巨大的灾难。为了研究大型水母生态习性,进而揭示其暴发机理并进行灾害的预警防治,近些年来国内外学者开展了大量的采用网具、目视、水下摄像、声学技术、航空影像等多种手段的大型水母监测调查工作,其中使用声学技术对大型水母进行资源评估和行为跟踪目前在欧美、日本、韩国等渔业发达国家已经开展了相关应用,在资源评估、运动学规律等研究中展现出较好的观测效果和应用潜力。目前我国在大型水母声学观测研究应用领域鲜有文献报道,通过介绍国际上利用声学技术对大型水母进行资源调查与评估、空间分布监测、运动规律等研究成果,为今后我国开展大型水母声学调查研究提供理论基础和科学依据。通过本文的分析,建议可以借鉴国际上采用科学鱼探仪、高分辨率成像声呐、声学信标等方法对大型水母进行监测调查和资源评估的研究成果,结合实际情况将声学技术逐步研究并应用到我国大型水母资源调查与评估、自然生态习性研究、重点水域大型水母动态监测预警中去,完善我国大型水母监测调查体系。     

Characterization of an aminotransferase from Acanthamoeba polyphaga Mimivirus

Acanthamoeba polyphaga Mimivirus, a complex virus that infects amoeba, was first reported in 2003. It is now known that its DNA genome encodes for nearly 1,000 proteins including enzymes that are required for the biosynthesis of the unusual sugar 4‐amino‐4,6‐dideoxy‐d‐glucose, also known as d‐viosamine. As observed in some bacteria, the pathway for the production of this sugar initiates with a nucleotide‐linked sugar, which in the Mimivirus is thought to be UDP‐d‐glucose. The enzyme required for the installment of the amino group at the C‐4′ position of the pyranosyl moiety is encoded in the Mimivirus by the L136 gene. Here, we describe a structural and functional analysis of this pyridoxal 5′‐phosphate‐dependent enzyme, referred to as L136. For this analysis, three high‐resolution X‐ray structures were determined: the wildtype enzyme/pyridoxamine 5′‐phosphate/dTDP complex and the site‐directed mutant variant K185A in the presence of either UDP‐4‐amino‐4,6‐dideoxy‐d‐glucose or dTDP‐4‐amino‐4,6‐dideoxy‐d‐glucose. Additionally, the kinetic parameters of the enzyme utilizing either UDP‐d‐glucose or dTDP‐d‐glucose were measured and demonstrated that L136 is efficient with both substrates. This is in sharp contrast to the structurally related DesI from Streptomyces venezuelae, whose three‐dimensional architecture was previously reported by this laboratory. As determined in this investigation,DesI shows a profound preference in its catalytic efficiency for the dTDP‐linked sugar substrate. This difference can be explained in part by a hydrophobic patch in DesI that is missing in L136. Notably, the structure of L136 reported here represents the first three‐dimensional model for a virally encoded PLP‐dependent enzyme and thus provides new information on sugar aminotransferases in general.